SNP Profiles of PA 107   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
1._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
2._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
3._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
4._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
5._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
6._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
7._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
8._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
9._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
10._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
11._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
12._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
13._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
14._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
15._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
16._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
17._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
18._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
19._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
20._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
21._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
22._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
23._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
24._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
25._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
26._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
27._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
28._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
29._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
30._PA_107_[PER]
CCAGCGTTTTCCTT_CCCCAAAGCCAA
31._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
32._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCC_
33._PA_107_[PER]
CCAGCGTTTTCCTTTTCC_AAAGCCAA
34._GC-02-001-1-01
CCAGCGTTTTCCTTTTCC_AAAGCCAA
35._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
36._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
37._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
38._GC-02-001-1-01
CCAGCGTTTTCCTT_CCCCAAAGCCAA
39._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
40._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCC_
41._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
42._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
43._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
44._RUQ_1728
__CG____TT_CC_AG_AA
45._RUQ_1728
GGAGCGAAAACCAAAA__AAAGGGAA
46._MITC-000340
GGAGCGAAAACCAAAA__AAAGGGAA
 1516171819202122232425262728
_Input profile
CTATCGCTCCGGGGGGCTCCCGTTCTAA
1._GC-08-111-3-10
CTATCGCTCCGGGGGGCTCCCGTTCTAA
2._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
3._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
4._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
5._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
6._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
7._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
8._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
9._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
10._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
11._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
12._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
13._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
14._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
15._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
16._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
17._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
18._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
19._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
20._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
21._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
22._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
23._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
24._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
25._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
26._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
27._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
28._PA_107_[PER]
CTAACG_CCGGGGGGCTCCCGTTCTAA
29._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
30._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
31._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
32._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
33._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
34._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
35._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
36._GC-08-111-3-10
CTAACG_CCGGGGGGCTCCCGTTCTAA
37._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
38._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
39._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
40._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
41._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
42._PA_107_[PER]
CTAACGCTCCGGGGAACTCCCGTTCTAA
43._PA_107_[PER]
CTAACGCTCCGGGGAACTCCCGTTCTAA
44._RUQ_1728
_____GGGGAA_CCCG__AA
45._RUQ_1728
AGAACGAGGGCCCC_AGCCCGAA_AA
46._MITC-000340
AGAACGAGGGCCCC_AGCCCGAA_AA
 2930313233343536373839   
_Input profile
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
1._GC-08-111-3-10
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
2._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
3._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
4._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
5._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
6._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
7._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
8._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
9._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
10._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
11._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
12._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
13._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
14._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
15._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
16._GC-08-111-3-10
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
17._GC-08-111-3-10
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
18._GC-08-111-3-10
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
19._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
20._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
21._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
22._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
23._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
24._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
25._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
26._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
27._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
28._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
29._PA_107_[PER]
GGGGAACCAGCCCT_ACATGGX_XX_XX_X
30._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
31._PA_107_[PER]
GGGGAACCAGCC_GTACATGGX_XX_XX_X
32._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
33._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
34._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
35._GC-02-001-1-01
GGGGAACCAGCCCT_ACATGGX_XX_XX_X
36._GC-08-111-3-10
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
37._GC-08-111-3-10
GGGGAACCAGCC_GTACATGGX_XX_XX_X
38._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
39._GC-02-001-1-01
GGGGAACCAGCC_GTACATGGX_XX_XX_X
40._GC-02-001-1-01
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
41._PA_107_[PER]
GGGGAACCAGCC_GTACATGGX_XX_XX_X
42._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
43._PA_107_[PER]
GGGGAACCAGCCCTGTACATGGX_XX_XX_X
44._RUQ_1728
____AG___AC__X_XX_XX_X
45._RUQ_1728
_GGAAGGAGGGAGACACATGGX_XX_XX_X
46._MITC-000340
_GGAAGGAGGGAGACACATGGX_XX_XX_X

Input profile: PA_107_[PER]

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 7
 Dapeng Zhang, 2016

1._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._PA_107_[PER]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2101 9
 Dapeng Zhang, 2016

3._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 4 > FP
 Dapeng Zhang, 2016

4._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

5._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

6._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 1 > FP
 Dapeng Zhang, 2016

7._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 16
 Dapeng Zhang, 2016

8._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 15
 Dapeng Zhang, 2016

9._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 11
 Dapeng Zhang, 2016

10._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 10
 Dapeng Zhang, 2016

11._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 10
 Dapeng Zhang, 2016

12._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

13._PA_107_[PER] GC-02-001-1-01

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

14._PA_107_[PER] GC-02-001-1-01

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._PA_107_[PER] GC-02-001-1-01

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._PA_107_[PER] GC-08-111-3-10

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

17._PA_107_[PER] GC-08-111-3-10

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._PA_107_[PER] GC-08-111-3-10

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._PA_107_[PER] GC-02-001-1-01

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

20._PA_107_[PER] GC-02-001-1-01

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

21._PA_107_[PER] GC-02-001-1-01

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

22._PA_107_[PER] GC-02-001-1-01

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

23._PA_107_[PER] GC-02-001-1-01

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

24._PA_107_[PER] GC-02-001-1-01

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._PA_107_[PER] GC-02-001-1-01

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

26._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 14
 Dapeng Zhang, 2016

27._PA_107_[PER]

98.7 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 13
 Dapeng Zhang, 2016

28._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 8
 Dapeng Zhang, 2016

29._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 12
 Dapeng Zhang, 2016

30._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 8
 Dapeng Zhang, 2016

31._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 7
 Dapeng Zhang, 2016

32._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 5
 Dapeng Zhang, 2016

33._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 3
 Dapeng Zhang, 2016

34._PA_107_[PER] GC-02-001-1-01

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

35._PA_107_[PER] GC-02-001-1-01

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

36._PA_107_[PER] GC-08-111-3-10

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

37._PA_107_[PER] GC-08-111-3-10

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

38._PA_107_[PER] GC-02-001-1-01

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

39._PA_107_[PER] GC-02-001-1-01

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

40._PA_107_[PER] GC-02-001-1-01

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

41._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 4 > FP
 Dapeng Zhang, 2016

42._PA_107_[PER]

96.2 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 90 C0213 2B
 Dapeng Zhang, 2016

43._PA_107_[PER]

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 284
 Dapeng Zhang, 2016

44._PA_107_[PER] RUQ_1728

92.3 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

45._PA_107_[PER] RUQ_1728

48.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._PA_107_[PER] MITC-000340

48.5 %
34 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25